CDS

Accession Number TCMCG057C07674
gbkey CDS
Protein Id XP_018471055.1
Location complement(join(30388765..30388944,30389020..30389109,30389197..30389361,30389439..30389531,30389617..30389835,30389916..30390119,30390207..30390296,30390413..30390530,30390626..30390738,30390820..30391023,30391124..30391276,30391504..30391771,30391863..30392014,30392157..30392361,30392493..30393367))
Gene LOC108842582
GeneID 108842582
Organism Raphanus sativus

Protein

Length 1042aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018615553.1
Definition PREDICTED: probable ubiquitin conjugation factor E4 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category O
Description ubiquitin conjugation factor E4
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10596        [VIEW IN KEGG]
ko:K10597        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko04120        [VIEW IN KEGG]
ko04141        [VIEW IN KEGG]
map04120        [VIEW IN KEGG]
map04141        [VIEW IN KEGG]
GOs GO:0000209        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006508        [VIEW IN EMBL-EBI]
GO:0006511        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010243        [VIEW IN EMBL-EBI]
GO:0010498        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0019941        [VIEW IN EMBL-EBI]
GO:0030163        [VIEW IN EMBL-EBI]
GO:0030433        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034450        [VIEW IN EMBL-EBI]
GO:0034976        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0036503        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043161        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044257        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051603        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0061630        [VIEW IN EMBL-EBI]
GO:0061659        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901565        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGACGACGAGCAAGCCTCAGAGATCGCCTGCGGAAATCGAGGACATAATCCTCCGCAAGATATTCTACGTAACCCTAACGGAATCCACCGCTCCTCCTCCCGATCCTCGAGTCGTATACCTGGAGATGACAGCCGCGGAGATTCTCAGCGAAGGCAAGGACGACCTCCTGCTCTCCCGCGATCTGATGGAGAGAGTACTCATCGACCGTCTCTCCGGCGACTTCTCCTCCTCCGCCGAGCCTCCTTTCCCGTACCTCGTCGGCTGCTACCGCCGCGCATGCGACGAGTCGAAGAAGATCCAGTCGATGAAGGACAAGAGTCTCAGATCGGAGATGGAGATCGCGACGAGGGAGGCGAAGAAGCTCGCCGTTTCTTACTGCAGGATCCACCTGGCGAATCCCGACATGTTTGGGGGCTCGGAGGATAAGCCCAGCGGCGGATTGAAGAAGAGGAGCGTCTCTCCTTTGCTTCCGTTGATCTTCTCCGAGGTTGATTCCGGCTCGTTGGATATGTTTGGTGGGAGTGGGAGCAGTAGCGGCGGCGTTCAGTCTCCTCCGGGGTTTTTGGATGAGTTTTTCAGAGACTCGGATTTTGATAACTTGGACGTGATTCTCAAGGAGTTGTACGAGGACTTGAGGTCTACGGTTATTAACGTGTCTGTGCTTGGTGATTTCCAGCCGCCGTTGAGGGCGCTTAAGTATCTCGTTAGCTTACCTGTTGGAGCTAAGTCTCTCGTTAGTCATGAGTGGTGGGTTCCACGTGGGGCTTATATGAACGGTCGTGCTATGGAGTTGACCAGTATTCTCGGGCCTTTCTTCCACATTAGCGCACTGCCGGATAACACTCTCTTCAAGAGTCAGCCTGATGTTGGGCAGCAGTGTTTCTCTCAAGCATCGGAACGTCGTCCTGCAGATTTATTATCTTCCTTCTCTACAATCAAAAACTTTATGAACATTTTGTACAGTGGGCTGCATGATGTACTGATGATTTTACTTAAAAGTACCGATACACGTGAGTGTGTTCTGCAGTTTCTTGCTGAGGTGATCAATGCAAATGCGTCGAGAGGTCATATGCAGGTTGATCCCGTCTCTTGTGCTAGCTCAGGCATGTTTTGTAATCTCAGTGCGGTCATGCTCCGGCTCTGTGAACCTTTTTTGGACCCGCATTTAACTAAAAGGGATAAGATTGATCCGAGATATGTATTCTATGGTCATCGTTTAAAATTAAGTGACTTGACTGCTCTCCATGCATCATCCGAGGAAGTTTCTGAGTGGATTGACAAGGATAATACGGAAAAAGCAAACGACGCTAGAAACGGGAATGAAAGCCGCTTGTTACAATCCAAAGAAGCTACAAGTTCAAGTAGTAATAGTTCTGTGCAAAACGCAAAGTCAACCACTAAATACAATTTCATTTGTGAATGCTTCTTTATGACTGCTAGGGTCCTCAATTTGGGTCTCCTAAAAGCACTCTCGGACTTCAAACATCTTGCTCAGGACATCTCGAGAGGTGAAGACAACCTTGCAACATTAAAAGCCATGAGAGATCAATCACCTTCTCCACAATTAGAACTTGACATAACCAGAATGGAAAAGGAACTAGAGCTGTATTCTCAGGAAAAGCTTTGTCATGAGGCTCAAATATTAAGGGATGGAGATTTTATTCAGCGAGCCCTCTCTTTCTATCGATTAGTGGTTGTTTGGTTAGTTGGACTTGTTGGTGGCTTTAAGATGCCTTTACCGTCAACTTGCCCCATGGAAATCTCCTGTATGCCTGAGCATTTTGTAGAAGATGCAATGGAGTTACTGATATTTGCTTCAAGAATCCCCAAAGCTTTGGATGGGGTGCAGCTGGACGACTTTATGAACTTCATAATAATGTTCATGGCAAGTCCAGAATATGTTAGAAACCCGTATCTCAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATGCCCCGTTCAAGTGGTTCGTCGTCTGCTACATCTACTCTCTTCGAAGGCCATCAGTTATCGCTCGAGTATCTTGTCAGGAATTTACTGAAACTATATGTTGACATTGAGTTCACGGGTTCTCACACTCAGTTCTATGACAAGTTCAATATTCGCCACAACATTGCCGAGCTTCTAGAGTATCTCTGGCAAGTACATAGTCACCGAAATGCATGGAGACGGATTGCAAAAGAGGAAGAGAAGGGCGTGTACTTGAACTTCTTAAACTTCTTAGTTAACGATAGCATCTATCTTCTGGATGAAAGTCTGAACAAAATTCTCGAGATTAAACAAATCGAGGCAGAGATGTCGAATACTGAAGAGTGGGAGCAGAGACCAGCGCAAGAGAGACAAGATAGAACGAGGCTCTTCCATTCTCAGGAGAATATTGTTAGAATAGACATGAAGCTGGCTAATGAAGATGTGACGATGCTTGCATTTACATCTGAAGAGATCACAGCCCCTTTTCTACTCCCTGAGATGGTTGAGAGAGTTGCGAATATGCTTAACTACTTCTTGCTACAACTCGTGGGTCCACAACGTAAGTCTTTAAGCTTGAAAGATCCTGAGAAGTACGAGTTCCGTCCACGACAATTGCTTAAACAGATTGTCCGTATATATGTCAATCTCGCAAGAGGAGACTCGGAAAACATATTCCCCGGTGCCATATCGAGTGATGGACGGTCATATAACGAACAGCTATTCGACGCAGGAGCAGATGTGCTTAGGAAAATATGCGAAGATGGAAGAATCATTCAAGAGTTTATGGAGTTGGGCACAAAGGCCAAAGCTGCTGCTTCGGAAGCTTTGGATGCTGAAGCTGCACTTGGTGAAATACCAGAAGAGTTCCTCGACCCTATCCAGTACACGCTAATGAGAGATCCAGTGATACTTCCAAGCTCAAAAACCACAGTTGATCGAGCCATCATTCAACGGCATCTTCTTAGTGACAATCACGATCCGTTTAACCGGGCACATTTGACATCGGATATGTTAATACCGGACGTGGAGTTGAAAGCGAGAATCGATGAGTTTGTGAGGTCGCATCAGTCTAAGAAACGGGCAAGTGGAGAAGATGGGAGCAGCAACAAGGAGAGGATACAGACTACAAGCAGTGATATGTTGATCGATTAG
Protein:  
MATTSKPQRSPAEIEDIILRKIFYVTLTESTAPPPDPRVVYLEMTAAEILSEGKDDLLLSRDLMERVLIDRLSGDFSSSAEPPFPYLVGCYRRACDESKKIQSMKDKSLRSEMEIATREAKKLAVSYCRIHLANPDMFGGSEDKPSGGLKKRSVSPLLPLIFSEVDSGSLDMFGGSGSSSGGVQSPPGFLDEFFRDSDFDNLDVILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGAKSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSQASERRPADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRECVLQFLAEVINANASRGHMQVDPVSCASSGMFCNLSAVMLRLCEPFLDPHLTKRDKIDPRYVFYGHRLKLSDLTALHASSEEVSEWIDKDNTEKANDARNGNESRLLQSKEATSSSSNSSVQNAKSTTKYNFICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQSPSPQLELDITRMEKELELYSQEKLCHEAQILRDGDFIQRALSFYRLVVVWLVGLVGGFKMPLPSTCPMEISCMPEHFVEDAMELLIFASRIPKALDGVQLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCWMPRSSGSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVHSHRNAWRRIAKEEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEAEMSNTEEWEQRPAQERQDRTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVANMLNYFLLQLVGPQRKSLSLKDPEKYEFRPRQLLKQIVRIYVNLARGDSENIFPGAISSDGRSYNEQLFDAGADVLRKICEDGRIIQEFMELGTKAKAAASEALDAEAALGEIPEEFLDPIQYTLMRDPVILPSSKTTVDRAIIQRHLLSDNHDPFNRAHLTSDMLIPDVELKARIDEFVRSHQSKKRASGEDGSSNKERIQTTSSDMLID